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Faculty of Biology, Chemistry & Earth Sciences

Höcker lab – Protein Design

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Algorithms & Software

PocketOptimizerHide

prediction of affinity increasing mutations in a protein-binding pocket

Malisi et al., 2012

Version 1.2.0 - March 2016

Dependencies: all dependencies included except for python 2.7, numpy, tinker and matplotlib.
Providing binaries for Linux 64bit only

src

Linux x86_64

Dockerfile for installing automatically as Docker Container

Version 1.1.0 - March 2014

Dependencies: all dependencies included except for python 2.7.6, numpy, and matplotlib.
Providing binaries for Linux, Windows, and OS X

src

Linux x86_64

Windows i386

OS X 10.9 x86_64

OS X 10.9 i386

OS X 10.6 x86_64

OS X 10.6 i386

Version 1.0 - October 2009

Dependencies: BALL

src

ScaffoldSelectionHide

searches large sets of protein structures for potential attachment sites of an enzymatic motif

Malisi et al., 2009

Version 1.2.0 - February 2014

Dependencies: all dependencies included
Providing binaries for Linux, Windows, and OS X (incl. BALL & boost)

src

Linux x86_64

Windows i386

OS X 10.9 x86_64

OS X 10.9 i386

OS X 10.6 x86_64

OS X 10.6 i386

Version 1.1.0 - December 2013

Dependencies: BALL 1.4.2, boost 1.55, lpsolve 5.5
Binary version for Linux

src

Linux x86_64

Version 1.0 - October 2009

Dependencies: BALL 1.2, boost 1.55, lpsolve 5.5

src


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