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3D-structures (X-ray, NMR & Computational models)

X-ray crystallography, NMR & Computational models)

NameDescriptionDownloadReference

DeNovoTIM13-SB

DeNovoTIM13-SB, a de novo designed TIM barrel with a salt-bridge cluster

7P12 Kordes et al., 2021

DeNovoTIM6-SB

DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 2)

7OT8 Kordes et al., 2021
DeNovoTIM6-SB

DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1)

7OSV Kordes et al., 2021
sTIM11noCys-SB

sTIM11noCys-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 2)

7OT7 Kordes et al., 2021
sTIM11noCys-SB

sTIM11noCys-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1)

7OSU Kordes et al., 2021
PotF/D (4JDF reprocessed) E.coli's putrescine receptor variant PotF/D in complex with spermidine 7OYZ Kröger et al., 2021
PotF/D S247D E.coli's putrescine receptor variant PotF/D (4JDF) with mutation S247D in complex with spermidine 7OYY Kröger et al., 2021
PotF/D E39D Y87S F88Y S247D E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D Y87S F88Y S247D in complex with spermidine 7OYX Kröger et al., 2021
PotF/D E39D F88L S247D E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D F88L S247D in complex with spermidine 7OYW Kröger et al., 2021
PotF/D E39D F88A S247D E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D F88A S247D in complex with spermidine 7OYV Kröger et al., 2021
PotF/D E39D Y87S F88Y E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D Y87S F88Y in complex with spermidine 7OYU Kröger et al., 2021
PotF/D E39D F88L E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D F88L in complex with spermidine 7OYT Kröger et al., 2021
PotF/D E39D Y87S E.coli's putrescine receptor variant PotF/D (4JDF) with mutations E39D Y87S in complex with spermidine 7OYS Kröger et al., 2021
sTIM11noCys Crystal structure of sTIM11noCys, a de novo designed TIM barrel 6YQY Romero-Romero et al., 2021
DeNovoTIM6 Crystal structure of DeNovoTIM6, a de novo designed TIM barrel 6Z2I Romero-Romero et al., 2021
DeNovoTIM13 Crystal structure of DeNovoTIM13, a de novo designed TIM barrel 6YQX Romero-Romero et al., 2021
Streptavidin S112I Q114A R121A L124Y + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112I Q114A R121A L124Y complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T32 Lechner et al., 2021
Streptavidin S112F Q114A R121A L124Y + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112F Q114A R121A L124Y complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T31 Lechner et al., 2021
Streptavidin Q114A R121A + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin Q114A R121A complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T30 Lechner et al., 2021
Streptavidin S112M Q114A R121A + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112M Q114A R121A complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T2Z Lechner et al., 2021
Streptavidin S112A Q114A R121A L124Y + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112A Q114A R121A L124Y complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T2Y Lechner et al., 2021
Streptavidin S112A Q114A R121A + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112A Q114A R121A complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T2L Lechner et al., 2021
Streptavidin S112A R121A + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112A R121A complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T1K Lechner et al., 2021
Streptavidin S112A Q114T R121A + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin S112A Q114T R121A complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T1G Lechner et al., 2021
Streptavidin wt + biotinylated 4-(piperidin-1-yl)pyridine Streptavidin wt complexed with biotinylated 4-(piperidin-1-yl)pyridine 6T1E Lechner et al., 2021
TrpR M42F T44L T81I S88Y + IAN E. coli Tryptophan Repressor M42F T44L T81I S88Y complexed with Indole-3-Acetonitrile 6ELG Herud-Sikimic et al., 2021
TrpR M42F T44L T81I S88Y + IAA E. coli Tryptophan Repressor M42F T44L T81I S88Y complexed with Indole-3-Acetic Acid 6ELF Herud-Sikimic et al., 2021
TrpR M42F T44L T81M N87G S88Y + IAA E. coli Tryptophan Repressor M42F T44L T81M N87G S88Y complexed with Indole-3-Acetic Acid 6ELB Herud-Sikimic et al., 2021
TrpR T44L T81M N87G S88Y + IAA E. coli Tryptophan Repressor T44L T81M N87G S88Y complexed with Indole-3-Acetic Acid 6ENN Herud-Sikimic et al., 2021
TrpR T44L T81M S88Y + IAA E. coli Tryptophan Repressor T44L T81M S88Y complexed with Indole-3-Acetic Acid 6EKP Herud-Sikimic et al., 2021
TrpR T44L S88Y + IAA E. coli Tryptophan Repressor T44L S88Y complexed with Indole-3-Acetic Acid 6ENI Herud-Sikimic et al., 2021
TrpR S88Y + IAA E. coli Tryptophan Repressor S88Y complexed with Indole-3-Acetic Acid 6EJZ Herud-Sikimic et al., 2021
TrpR wt + IAA E. coli Tryptophan Repressor complexed with Indole-3-Acetic Acid 6EJW Herud-Sikimic et al., 2021
sTIM11_helix3 de novo designed ba8-barrel sTIM11 with an alpha-helical extension 7A8S Wiese et al., 2021
PotF + CDV E.coli's Putrescine receptor PotF complexed with Cadaverine 6YE7 Kröger et al., 2020
PotF + AGM E.coli's Putrescine receptor PotF complexed with Agmatine 6YE6 Kröger et al., 2020
PotF + SPD E.coli's Putrescine receptor PotF complexed with Spermidine 6YE8 Kröger et al., 2020
PotF + PUT E.coli's Putrescine receptor PotF complexed with Putrescine 6YE0 Kröger et al., 2020
PotF + SPM E.coli's Putrescine receptor PotF complexed with Spermine 6YEC Kröger et al., 2020
PotF apo closed E.coli's Putrescine receptor PotF in its closed apo state 6YEB Kröger et al., 2020
PotF apo open E.coli's Putrescine receptor PotF in its open apo state 6YED Kröger et al., 2020
TrpR + 5-Met-L-Trp Tryptophan Repressor TrpR from E.coli with 5-methyl-L-tryptophan as ligand 6F9K Stiel et al., 2020
TrpR + 5-Met-tryptamine Tryptophan Repressor TrpR from E.coli with 5-Methyltryptamine 6F7G Stiel et al., 2020
TrpR + IPA Tryptophan Repressor TrpR from E.coli with 3-Indolepropionic acid 6F7F Stiel et al., 2020
TrpR S88Y + IPA Tryptophan Repressor TrpR from E.coli with 3-Indolepropionic acid 6FAL Stiel et al., 2020
LAO L117K LAO L117K mutant with Glutamin bound 5OWF Banda-Vazquez et al., 2018
de novo TIM-barrel Crystal structure of a designed, four-fold symmetric TIM-barrel protein 5BVL Huang, Feldmeier et al., 2016
N-TM0182 The sequence of N-TM0182 is equally related to two different folds 4Q37 Farias-Rico et al., 2014
PotF_SPD Putrescine binding protein engineered to bind spermidine 4JDF Scheib et al., 2013
Eno D321A Enolase with substitution D321A plus 2-PGA 2XH7 Schreier et al., 2010
Eno S39A D321A Enolase with substitution S39A and D321A plus 2-PGA 2XH4 Schreier et al., 2010
Eno S39N D321A Enolase with substitution S39N and D321A plus 2-PGA 2XH2 Schreier et al., 2010
Eno S39N Q167K Enolase with substitution S39N, Q167K and D321R plus PEP 2XH0 Schreier et al., 2010
Eno S39N D321R Enolase with substitution S39N and D321R plus PEP 2XGZ Schreier et al., 2010
ABP-stn Arabinose binding protein designed to bind serotonin, but without its ligand 2WRZ Schreier et al., 2009
HisA-II HisA mutated to perform the reaction of TrpF 2W79 Claren et al., 2009
HisF-C***C Artificial (ba)8-barrel build from identical halves 2W6R Höcker et al., 2009
CheYHisF Chimeric protein build from fragments of CheY and HisF

3CWO

Bharat  et al., 2008

NMR Structures

NameDescriptionDownloadReference
cU3SdReconstructing the Origins of the HemD-like fold6TH8Toledo-Patiño et al., 2019
CheYHisF-RMChimeric protein build from CheY and HisF optimized by computational design2LLEEisenbeis et al., 2012

Computational Models

NameDescriptionDownloadReference
CheYHisF-input
Homology model of the chimera CheYHisF, input for design calculationsmore ...Eisenbeis et al., 2012
CheYHisF-RosettaCheYHisF with mutations suggested by computational design with Rosettamore ...Eisenbeis et al., 2012

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